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Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Protected Attributes
vtkGaussianCubeReader Class Reference

read ASCII Gaussian Cube Data files More...

#include <vtkGaussianCubeReader.h>

Inheritance diagram for vtkGaussianCubeReader:
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Collaboration diagram for vtkGaussianCubeReader:
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List of all members.

Public Types

typedef vtkMoleculeReaderBase Superclass
- Public Types inherited from vtkMoleculeReaderBase
- Public Types inherited from vtkPolyDataAlgorithm
- Public Types inherited from vtkAlgorithm
- Public Types inherited from vtkObject

Public Member Functions

virtual const char * GetClassName ()
virtual int IsA (const char *type)
void PrintSelf (ostream &os, vtkIndent indent)
virtual vtkTransformGetTransform ()
virtual void SetFileName (const char *)
virtual char * GetFileName ()
vtkImageDataGetGridOutput ()
- Public Member Functions inherited from vtkMoleculeReaderBase
virtual int GetNumberOfAtoms ()
virtual void SetBScale (double)
virtual double GetBScale ()
virtual void SetHBScale (double)
virtual double GetHBScale ()
- Public Member Functions inherited from vtkPolyDataAlgorithm
vtkDataObjectGetInput ()
vtkDataObjectGetInput (int port)
vtkPolyDataGetPolyDataInput (int port)
vtkPolyDataGetOutput ()
vtkPolyDataGetOutput (int)
virtual void SetOutput (vtkDataObject *d)
virtual int ProcessRequest (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
void SetInput (vtkDataObject *)
void SetInput (int, vtkDataObject *)
void AddInput (vtkDataObject *)
void AddInput (int, vtkDataObject *)
- Public Member Functions inherited from vtkAlgorithm
int HasExecutive ()
vtkExecutiveGetExecutive ()
virtual void SetExecutive (vtkExecutive *executive)
virtual int ModifyRequest (vtkInformation *request, int when)
vtkInformationGetInputPortInformation (int port)
vtkInformationGetOutputPortInformation (int port)
int GetNumberOfInputPorts ()
int GetNumberOfOutputPorts ()
void UpdateProgress (double amount)
vtkInformationGetInputArrayInformation (int idx)
void RemoveAllInputs ()
vtkDataObjectGetOutputDataObject (int port)
virtual void RemoveInputConnection (int port, vtkAlgorithmOutput *input)
int GetNumberOfInputConnections (int port)
int GetTotalNumberOfInputConnections ()
vtkAlgorithmOutputGetInputConnection (int port, int index)
virtual void Update ()
virtual void UpdateInformation ()
virtual void UpdateWholeExtent ()
void ConvertTotalInputToPortConnection (int ind, int &port, int &conn)
virtual double ComputePriority ()
int ProcessRequest (vtkInformation *request, vtkCollection *inInfo, vtkInformationVector *outInfo)
virtual int ComputePipelineMTime (vtkInformation *request, vtkInformationVector **inInfoVec, vtkInformationVector *outInfoVec, int requestFromOutputPort, unsigned long *mtime)
virtual vtkInformationGetInformation ()
virtual void SetInformation (vtkInformation *)
virtual void Register (vtkObjectBase *o)
virtual void UnRegister (vtkObjectBase *o)
virtual void SetAbortExecute (int)
virtual int GetAbortExecute ()
virtual void AbortExecuteOn ()
virtual void AbortExecuteOff ()
virtual void SetProgress (double)
virtual double GetProgress ()
void SetProgressText (const char *ptext)
virtual char * GetProgressText ()
virtual unsigned long GetErrorCode ()
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)
virtual void SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)
virtual void SetInputArrayToProcess (int idx, vtkInformation *info)
virtual void SetInputArrayToProcess (int idx, int port, int connection, const char *fieldAssociation, const char *attributeTypeorName)
vtkDataObjectGetInputDataObject (int port, int connection)
virtual void SetInputConnection (int port, vtkAlgorithmOutput *input)
virtual void SetInputConnection (vtkAlgorithmOutput *input)
virtual void AddInputConnection (int port, vtkAlgorithmOutput *input)
virtual void AddInputConnection (vtkAlgorithmOutput *input)
vtkAlgorithmOutputGetOutputPort (int index)
vtkAlgorithmOutputGetOutputPort ()
virtual void SetReleaseDataFlag (int)
virtual int GetReleaseDataFlag ()
void ReleaseDataFlagOn ()
void ReleaseDataFlagOff ()
int UpdateExtentIsEmpty (vtkDataObject *output)
int UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)
- Public Member Functions inherited from vtkObject
virtual void DebugOn ()
virtual void DebugOff ()
unsigned char GetDebug ()
void SetDebug (unsigned char debugFlag)
virtual void Modified ()
virtual unsigned long GetMTime ()
unsigned long AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)
unsigned long AddObserver (const char *event, vtkCommand *, float priority=0.0f)
vtkCommandGetCommand (unsigned long tag)
void RemoveObserver (vtkCommand *)
void RemoveObservers (unsigned long event, vtkCommand *)
void RemoveObservers (const char *event, vtkCommand *)
int HasObserver (unsigned long event, vtkCommand *)
int HasObserver (const char *event, vtkCommand *)
void RemoveObserver (unsigned long tag)
void RemoveObservers (unsigned long event)
void RemoveObservers (const char *event)
void RemoveAllObservers ()
int HasObserver (unsigned long event)
int HasObserver (const char *event)
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)
template<class U , class T >
unsigned long AddObserver (unsigned long event, U observer, void(T::*callback)(vtkObject *, unsigned long, void *), float priority=0.0f)
int InvokeEvent (unsigned long event, void *callData)
int InvokeEvent (const char *event, void *callData)
int InvokeEvent (unsigned long event)
int InvokeEvent (const char *event)
- Public Member Functions inherited from vtkObjectBase
const char * GetClassName () const
virtual void Delete ()
virtual void FastDelete ()
void Print (ostream &os)
void SetReferenceCount (int)
void PrintRevisions (ostream &os)
virtual void PrintHeader (ostream &os, vtkIndent indent)
virtual void PrintTrailer (ostream &os, vtkIndent indent)
int GetReferenceCount ()

Static Public Member Functions

static vtkGaussianCubeReaderNew ()
static int IsTypeOf (const char *type)
static vtkGaussianCubeReaderSafeDownCast (vtkObject *o)

Protected Member Functions

 vtkGaussianCubeReader ()
 ~vtkGaussianCubeReader ()
virtual int RequestData (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual int RequestInformation (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
void ReadSpecificMolecule (FILE *fp)
virtual int FillOutputPortInformation (int, vtkInformation *)
- Protected Member Functions inherited from vtkMoleculeReaderBase
 vtkMoleculeReaderBase ()
 ~vtkMoleculeReaderBase ()
int ReadMolecule (FILE *fp, vtkPolyData *output)
int MakeAtomType (const char *atype)
int MakeBonds (vtkPoints *, vtkIdTypeArray *, vtkCellArray *)
- Protected Member Functions inherited from vtkPolyDataAlgorithm
 vtkPolyDataAlgorithm ()
 ~vtkPolyDataAlgorithm ()
virtual int FillInputPortInformation (int port, vtkInformation *info)
virtual int RequestUpdateExtent (vtkInformation *, vtkInformationVector **, vtkInformationVector *)
virtual void ExecuteData (vtkDataObject *output)
virtual void Execute ()
- Protected Member Functions inherited from vtkAlgorithm
 vtkAlgorithm ()
 ~vtkAlgorithm ()
virtual void SetNumberOfInputPorts (int n)
virtual void SetNumberOfOutputPorts (int n)
int InputPortIndexInRange (int index, const char *action)
int OutputPortIndexInRange (int index, const char *action)
int GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)
virtual vtkExecutiveCreateDefaultExecutive ()
virtual void ReportReferences (vtkGarbageCollector *)
virtual void SetNumberOfInputConnections (int port, int n)
int GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)
int GetInputArrayAssociation (int idx, vtkDataObject *input)
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkDataArrayGetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkDataArrayGetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input)
vtkDataArrayGetInputArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input)
vtkAbstractArrayGetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)
vtkInformationGetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)
virtual void SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)
virtual void SetErrorCode (unsigned long)
- Protected Member Functions inherited from vtkObject
 vtkObject ()
virtual ~vtkObject ()
virtual void RegisterInternal (vtkObjectBase *, int check)
virtual void UnRegisterInternal (vtkObjectBase *, int check)
void InternalGrabFocus (vtkCommand *mouseEvents, vtkCommand *keypressEvents=NULL)
void InternalReleaseFocus ()
- Protected Member Functions inherited from vtkObjectBase
 vtkObjectBase ()
virtual ~vtkObjectBase ()
virtual void CollectRevisions (ostream &os)
 vtkObjectBase (const vtkObjectBase &)
void operator= (const vtkObjectBase &)

Protected Attributes

char * FileName
vtkTransformTransform
- Protected Attributes inherited from vtkMoleculeReaderBase
double BScale
double HBScale
int NumberOfAtoms
vtkPointsPoints
vtkUnsignedCharArrayRGB
vtkFloatArrayRadii
vtkIdTypeArrayAtomType

Detailed Description

read ASCII Gaussian Cube Data files

vtkGaussianCubeReader is a source object that reads ASCII files following the description in http://www.gaussian.com/00000430.htm The FileName must be specified.

Thanks:
Dr. Jean M. Favre who developed and contributed this class.
Tests:
vtkGaussianCubeReader (Tests)

Definition at line 37 of file vtkGaussianCubeReader.h.


Member Typedef Documentation

Reimplemented from vtkMoleculeReaderBase.

Definition at line 41 of file vtkGaussianCubeReader.h.


Constructor & Destructor Documentation

vtkGaussianCubeReader::vtkGaussianCubeReader ( )
protected
vtkGaussianCubeReader::~vtkGaussianCubeReader ( )
protected

Member Function Documentation

static vtkGaussianCubeReader* vtkGaussianCubeReader::New ( )
static

Create an object with Debug turned off, modified time initialized to zero, and reference counting on.

Reimplemented from vtkPolyDataAlgorithm.

virtual const char* vtkGaussianCubeReader::GetClassName ( )
virtual

Reimplemented from vtkMoleculeReaderBase.

static int vtkGaussianCubeReader::IsTypeOf ( const char *  name)
static

Return 1 if this class type is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkMoleculeReaderBase.

virtual int vtkGaussianCubeReader::IsA ( const char *  name)
virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkMoleculeReaderBase.

static vtkGaussianCubeReader* vtkGaussianCubeReader::SafeDownCast ( vtkObject o)
static

Reimplemented from vtkMoleculeReaderBase.

void vtkGaussianCubeReader::PrintSelf ( ostream &  os,
vtkIndent  indent 
)
virtual

Methods invoked by print to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from vtkMoleculeReaderBase.

virtual vtkTransform* vtkGaussianCubeReader::GetTransform ( )
virtual
virtual void vtkGaussianCubeReader::SetFileName ( const char *  )
virtual

Reimplemented from vtkMoleculeReaderBase.

virtual char* vtkGaussianCubeReader::GetFileName ( )
virtual

Reimplemented from vtkMoleculeReaderBase.

vtkImageData* vtkGaussianCubeReader::GetGridOutput ( )
virtual int vtkGaussianCubeReader::RequestData ( vtkInformation request,
vtkInformationVector **  inputVector,
vtkInformationVector outputVector 
)
protectedvirtual

This is called by the superclass. This is the method you should override.

Reimplemented from vtkMoleculeReaderBase.

virtual int vtkGaussianCubeReader::RequestInformation ( vtkInformation ,
vtkInformationVector **  ,
vtkInformationVector  
)
protectedvirtual

Reimplemented from vtkPolyDataAlgorithm.

void vtkGaussianCubeReader::ReadSpecificMolecule ( FILE *  fp)
protectedvirtual

Implements vtkMoleculeReaderBase.

virtual int vtkGaussianCubeReader::FillOutputPortInformation ( int  port,
vtkInformation info 
)
protectedvirtual

Fill the output port information objects for this algorithm. This is invoked by the first call to GetOutputPortInformation for each port so subclasses can specify what they can handle.

Reimplemented from vtkPolyDataAlgorithm.


Member Data Documentation

char* vtkGaussianCubeReader::FileName
protected

Reimplemented from vtkMoleculeReaderBase.

Definition at line 53 of file vtkGaussianCubeReader.h.

vtkTransform* vtkGaussianCubeReader::Transform
protected

Definition at line 54 of file vtkGaussianCubeReader.h.


The documentation for this class was generated from the following file: