|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use AnnotationDB | |
---|---|
org.biojava.bio.annodb | Databases of generic structured data (annotation) objects. |
Uses of AnnotationDB in org.biojava.bio.annodb |
---|
Classes in org.biojava.bio.annodb that implement AnnotationDB | |
---|---|
class |
IndexedAnnotationDB
A database of Annotation instances backed by an indexed file set. |
class |
LazyFilteredAnnotationDB
An implementation of AnnotationDB that lazily applies a filter. |
class |
LazySearchedAnnotationDB
An implementation of AnnotationDB that does a JIT search on another set. |
class |
MergingAnnotationDB
An AnnotationDB that provides a merged view of a list of underlying DBs. |
class |
SimpleAnnotationDB
A no-frills implementation of AnnotationDB. |
Fields in org.biojava.bio.annodb declared as AnnotationDB | |
---|---|
static AnnotationDB |
AnnotationDB.EMPTY
An AnnotationDB that is always empty. |
Methods in org.biojava.bio.annodb that return AnnotationDB | |
---|---|
AnnotationDB |
MergingAnnotationDB.filter(AnnotationType at)
|
AnnotationDB |
LazyFilteredAnnotationDB.filter(AnnotationType at)
|
AnnotationDB |
IndexedAnnotationDB.filter(AnnotationType at)
|
AnnotationDB |
AnnotationDB.filter(AnnotationType at)
Find all Annotation instances in this DB that are of a particular type. |
AnnotationDB |
SimpleAnnotationDB.filter(AnnotationType at)
|
AnnotationDB |
LazySearchedAnnotationDB.filter(AnnotationType at)
|
AnnotationDB |
MergingAnnotationDB.search(AnnotationType at)
|
AnnotationDB |
LazyFilteredAnnotationDB.search(AnnotationType at)
|
AnnotationDB |
IndexedAnnotationDB.search(AnnotationType at)
|
AnnotationDB |
AnnotationDB.search(AnnotationType at)
Find all Annotation instances in this DB and any Annotations that are child properties of these that match an AnnotationType. |
AnnotationDB |
SimpleAnnotationDB.search(AnnotationType at)
|
AnnotationDB |
LazySearchedAnnotationDB.search(AnnotationType at)
|
Methods in org.biojava.bio.annodb with parameters of type AnnotationDB | |
---|---|
void |
MergingAnnotationDB.addAnnotationDB(AnnotationDB toAdd)
Add a DB to be merged in this view. |
void |
MergingAnnotationDB.removeAnnotationDB(AnnotationDB toRemove)
Remove a DB from this view. |
Constructors in org.biojava.bio.annodb with parameters of type AnnotationDB | |
---|---|
LazyFilteredAnnotationDB(String name,
AnnotationDB source,
AnnotationType schema)
Create a new DB by wrapping another with a schema. |
|
LazySearchedAnnotationDB(String name,
AnnotationDB source,
AnnotationType schema)
Create a new DB from an old one by applying a schema. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |