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Packages that use OrthoPair | |
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org.biojava.bio.program.homologene | Support classes for Homologene data. |
Uses of OrthoPair in org.biojava.bio.program.homologene |
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Classes in org.biojava.bio.program.homologene that implement OrthoPair | |
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class |
SimpleOrthoPair
A no-frills implementation of the OrthoPair interface |
Methods in org.biojava.bio.program.homologene that return OrthoPair | |
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OrthoPair |
HomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
Create a computed orthology entry. |
OrthoPair |
SimpleHomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
SimilarityType type,
double percentIdentity)
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OrthoPair |
HomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
String ref)
Create a curated orthology entry. |
OrthoPair |
SimpleHomologeneDB.createOrthoPair(Orthologue first,
Orthologue second,
String ref)
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OrthoPair |
SimpleOrthoPairSet.Iterator.nextOrthoPair()
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OrthoPair |
OrthoPairSet.Iterator.nextOrthoPair()
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Methods in org.biojava.bio.program.homologene with parameters of type OrthoPair | |
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boolean |
OrthoPairFilter.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.AcceptAll.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.Not.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.Or.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.And.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.Xor.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.ByMinIdentity.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.ByMaxIdentity.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.BySimilarityType.accept(OrthoPair pair)
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boolean |
OrthoPairFilter.ByRef.accept(OrthoPair pair)
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void |
SimpleOrthoPairSet.addOrthoPair(OrthoPair orthology)
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void |
OrthoPairSet.addOrthoPair(OrthoPair orthology)
adds a specified OrthoPair relationship to this group. |
void |
SimpleOrthoPairSet.removeOrthoPair(OrthoPair orthology)
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void |
OrthoPairSet.removeOrthoPair(OrthoPair orthology)
removes a specified OrthoPair relationship from this group. |
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