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Packages that use SequenceAnnotator | |
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org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. |
org.biojava.bio.program.gff | GFF manipulation. |
org.biojava.bio.seq.db | Collections of biological sequence data. |
Uses of SequenceAnnotator in org.biojava.bio.dp |
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Classes in org.biojava.bio.dp that implement SequenceAnnotator | |
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class |
WeightMatrixAnnotator
Annotates a sequence with hits to a weight-matrix. |
Uses of SequenceAnnotator in org.biojava.bio.molbio |
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Classes in org.biojava.bio.molbio that implement SequenceAnnotator | |
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class |
RestrictionMapper
RestrictionMapper is a class for annotating
Sequence s with Feature s which represent
restriction sites. |
Uses of SequenceAnnotator in org.biojava.bio.program.gff |
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Methods in org.biojava.bio.program.gff that return SequenceAnnotator | |
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SequenceAnnotator |
GFFEntrySet.getAnnotator()
Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet. |
SequenceAnnotator |
GFFEntrySet.getAnnotator(boolean checkSeqName)
Get an annotator that can add GFF features to a Sequence using the features in this GFFEntrySet. |
Uses of SequenceAnnotator in org.biojava.bio.seq.db |
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Constructors in org.biojava.bio.seq.db with parameters of type SequenceAnnotator | |
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AnnotatedSequenceDB(SequenceDB parent,
SequenceAnnotator a)
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