org.biojava.bio.seq.io
Class EmblLikeLocationParser
java.lang.Object
org.biojava.bio.seq.io.EmblLikeLocationParser
Deprecated. Use org.biojavax.bio.seq.io framework instead
public class EmblLikeLocationParser
- extends Object
EmblLikeLocationParser
parses EMBL/Genbank style
locations. Supported location forms:
123
<123 or >123
(123.567)
(123.567)..789
123..(567.789)
(123.345)..(567.789)
123..456
<123..567 or 123..>567 or <123..>567
123^567
AL123465:(123..567)
- Since:
- 1.2
- Author:
- Keith James, Greg Cox
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
parseLocation
public Feature.Template parseLocation(String location,
Feature.Template theTemplate)
throws BioException
- Deprecated.
parseLocation
creates a Location
from
the String and returns a stranded location.
- Parameters:
location
- a location String
.theTemplate
- the template to be filled with the parsed out location
information.
- Throws:
BioException
- if an error occurs.