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Packages that use ReversibleTranslationTable | |
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org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of ReversibleTranslationTable in org.biojava.bio.dist |
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Methods in org.biojava.bio.dist that return ReversibleTranslationTable | |
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ReversibleTranslationTable |
TranslatedDistribution.getTable()
Retrieve the translation table encapsulating the map from this emission spectrum to the underlying one. |
Constructors in org.biojava.bio.dist with parameters of type ReversibleTranslationTable | |
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TranslatedDistribution(ReversibleTranslationTable table,
Distribution other,
DistributionFactory distFact)
Create a new TranslatedDistribution. |
Uses of ReversibleTranslationTable in org.biojava.bio.seq |
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Methods in org.biojava.bio.seq that return ReversibleTranslationTable | |
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static ReversibleTranslationTable |
NucleotideTools.complementTable()
Get a translation table for complementing Nucleotide symbols. |
static ReversibleTranslationTable |
RNATools.complementTable()
Get a translation table for complementing DNA symbols. |
static ReversibleTranslationTable |
DNATools.complementTable()
Get a translation table for complementing DNA symbols. |
static ReversibleTranslationTable |
RNATools.transcriptionTable()
Get a translation table for converting DNA to RNA. |
Uses of ReversibleTranslationTable in org.biojava.bio.symbol |
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Classes in org.biojava.bio.symbol that implement ReversibleTranslationTable | |
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class |
AbstractReversibleTranslationTable
an abstract class implementing basic functionality of a translation table that translates Symbols from one Alphabet to another. |
class |
SimpleReversibleTranslationTable
A no-frills implementation of TranslationTable that uses a Map to map from symbols in a finite source alphabet into a target alphabet. |
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