|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use BioSQLFeatureFilter | |
---|---|
org.biojavax.bio.db.biosql | Interface between biojava and biosql databases |
Uses of BioSQLFeatureFilter in org.biojavax.bio.db.biosql |
---|
Classes in org.biojavax.bio.db.biosql that implement BioSQLFeatureFilter | |
---|---|
class |
BioSQLAcceptAllFilter
The class that accepts all features. |
class |
BioSQLAcceptNoneFilter
The class that accepts no features. |
static class |
BioSQLFeatureFilter.And
A filter that returns all features accepted by both child filter. |
static class |
BioSQLFeatureFilter.ByName
Construct one of these to filter features by display name. |
static class |
BioSQLFeatureFilter.ByNote
A filter that returns all features that have the given note, and the value and rank is checked as well. |
static class |
BioSQLFeatureFilter.ByNoteTermOnly
A filter that returns all features that have a note with the given term. |
static class |
BioSQLFeatureFilter.ByRank
Construct one of these to filter features by rank. |
static class |
BioSQLFeatureFilter.BySequenceName
Accept features that reside on a sequence with a particular name. |
static class |
BioSQLFeatureFilter.BySourceTerm
Construct one of these to filter features by source. |
static class |
BioSQLFeatureFilter.BySourceTermName
Construct one of these to filter features by source (name only - parent ontology is ignored). |
static class |
BioSQLFeatureFilter.ByStrand
A filter that returns all features having locations on a given strand. |
static class |
BioSQLFeatureFilter.ByTypeTerm
Construct one of these to filter features by type. |
static class |
BioSQLFeatureFilter.ByTypeTermName
Construct one of these to filter features by type (name only - parent ontology is ignored). |
static class |
BioSQLFeatureFilter.ContainedByRichLocation
A filter that returns all features contained within a location. |
static class |
BioSQLFeatureFilter.HibernateFeatureFilter
A filter for Hibernate-BioSQL filters to extend. |
static class |
BioSQLFeatureFilter.Not
A filter that returns all features not accepted by a child filter. |
static class |
BioSQLFeatureFilter.Or
A filter that returns all features accepted by at least one child filter. |
static class |
BioSQLFeatureFilter.OverlapsRichLocation
A filter that returns all features overlapping a location. |
Fields in org.biojavax.bio.db.biosql declared as BioSQLFeatureFilter | |
---|---|
static BioSQLFeatureFilter |
BioSQLFeatureFilter.all
All features are selected by this filter. |
static BioSQLFeatureFilter |
BioSQLFeatureFilter.none
No features are selected by this filter. |
Methods in org.biojavax.bio.db.biosql that return BioSQLFeatureFilter | |
---|---|
static BioSQLFeatureFilter |
BioSQLFeatureFilter.Tools.convert(FeatureFilter ff)
Convert a non-BioSQL FeatureFilter into a BioSQL one. |
BioSQLFeatureFilter |
BioSQLFeatureFilter.Not.getChild()
|
BioSQLFeatureFilter |
BioSQLFeatureFilter.And.getChild1()
|
BioSQLFeatureFilter |
BioSQLFeatureFilter.Or.getChild1()
|
BioSQLFeatureFilter |
BioSQLFeatureFilter.And.getChild2()
|
BioSQLFeatureFilter |
BioSQLFeatureFilter.Or.getChild2()
|
Constructors in org.biojavax.bio.db.biosql with parameters of type BioSQLFeatureFilter | |
---|---|
BioSQLFeatureFilter.And(BioSQLFeatureFilter c1,
BioSQLFeatureFilter c2)
|
|
BioSQLFeatureFilter.Not(BioSQLFeatureFilter child)
|
|
BioSQLFeatureFilter.Or(BioSQLFeatureFilter c1,
BioSQLFeatureFilter c2)
|
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |