org.biojava.bio.seq.io
Class GenpeptFormat
java.lang.Object
org.biojava.bio.seq.io.GenbankFormat
org.biojava.bio.seq.io.GenpeptFormat
- All Implemented Interfaces:
- Serializable, EventListener, SequenceFormat, ParseErrorListener, ParseErrorSource
Deprecated. Use org.biojavax.bio.seq.io framework instead
public class GenpeptFormat
- extends GenbankFormat
This class is necessitated by the deprecation of
writeSequence(Sequence seq, String format, PrintStream os)
method. Now the format object must be intimately
associated to the format it is handling.
- Author:
- David Huen
- See Also:
- Serialized Form
Fields inherited from class org.biojava.bio.seq.io.GenbankFormat |
ACCESSION_TAG, AUTHORS_TAG, BASE_COUNT_TAG, CIRCULAR_TAG, COMMENT_TAG, COORDINATE_TAG, DATE_TAG, DEFAULT, DEFINITION_TAG, DIVISION_TAG, END_SEQUENCE_TAG, FEATURE_FLAG, FEATURE_LINE_PREFIX, FEATURE_TAG, GI_TAG, JOURNAL_TAG, KEYWORDS_TAG, LOCUS_TAG, MEDLINE_TAG, ORGANISM_TAG, PUBMED_TAG, REF_ACCESSION_TAG, REFERENCE_TAG, SIZE_TAG, SOURCE_TAG, START_SEQUENCE_TAG, STRAND_NUMBER_TAG, TITLE_TAG, TYPE_TAG, VERSION_TAG |
Method Summary |
String |
getDefaultFormat()
Deprecated. getDefaultFormat returns the String identifier for
the default format. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
GenpeptFormat
public GenpeptFormat()
- Deprecated.
getDefaultFormat
public String getDefaultFormat()
- Deprecated.
- Description copied from class:
GenbankFormat
getDefaultFormat
returns the String identifier for
the default format.
- Specified by:
getDefaultFormat
in interface SequenceFormat
- Overrides:
getDefaultFormat
in class GenbankFormat
- Returns:
- a
String
.