Uses of Class
org.biojava.bio.program.das.dasalignment.Alignment

Packages that use Alignment
org.biojava.bio.program.das.dasalignment request alignments via DAS 
 

Uses of Alignment in org.biojava.bio.program.das.dasalignment
 

Methods in org.biojava.bio.program.das.dasalignment that return Alignment
 Alignment DASAlignmentXMLResponseParser.getAlignment(int position)
          Returns Alignment at position ...
 Alignment[] DASAlignmentClient.getAlignments()
          Returns the alignments.
 Alignment[] DASAlignmentXMLResponseParser.getAlignments()
          Returns the alignments.
 Alignment[] DASAlignmentCall.getAlignments()
          connect to a DAS alignment service and retreive alignments.
 Alignment[] DASAlignmentClient.getAlignments(String query_)
          Returns the alignments.
 Alignment[] DASAlignmentCall.getAlignments(String query)
          connect to a DAS alignment service and retreive data.
 Alignment[] DASAlignmentCall.parseDASResponse(InputStream inStream)
          parse the Response of a DAS ALignment service and return a biojava Alignment object.