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Packages that use Edit | |
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org.biojava.bio.alignment | Classes to generate and describe sequence alignments. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.program.das | Development client for the Distributed Annotation System. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.homol | The classes and interfaces for defining sequence similarity and honology. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
org.biojavax.bio.db.biosql | Interface between biojava and biosql databases |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features. |
Uses of Edit in org.biojava.bio.alignment |
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Methods in org.biojava.bio.alignment with parameters of type Edit | |
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void |
FlexibleAlignment.edit(Object label,
Edit edit)
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void |
EditableAlignment.edit(Object label,
Edit edit)
edit() allows edits on an individual sequence, they should be reflected back to the underlying SymbolList. |
Uses of Edit in org.biojava.bio.dp |
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Methods in org.biojava.bio.dp with parameters of type Edit | |
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void |
SimpleStatePath.edit(Edit edit)
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Uses of Edit in org.biojava.bio.program.das |
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Methods in org.biojava.bio.program.das with parameters of type Edit | |
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void |
DASSequence.edit(Edit e)
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Uses of Edit in org.biojava.bio.seq |
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Methods in org.biojava.bio.seq with parameters of type Edit | |
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void |
NewSimpleAssembly.edit(Edit e)
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void |
SimpleAssembly.edit(Edit e)
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Uses of Edit in org.biojava.bio.seq.homol |
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Methods in org.biojava.bio.seq.homol with parameters of type Edit | |
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void |
SimilarityPairFeature.EmptyPairwiseAlignment.edit(Edit edit)
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Uses of Edit in org.biojava.bio.seq.impl |
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Methods in org.biojava.bio.seq.impl with parameters of type Edit | |
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void |
ViewSequence.edit(Edit edit)
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void |
SimpleSequence.edit(Edit edit)
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void |
RevCompSequence.edit(Edit e)
edit() will try to edit the underlying Sequence. |
void |
SubSequence.edit(Edit edit)
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void |
DummySequence.edit(Edit edit)
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Uses of Edit in org.biojava.bio.symbol |
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Methods in org.biojava.bio.symbol with parameters of type Edit | |
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void |
SimpleSymbolList.edit(Edit edit)
Apply and edit to the SymbolList as specified by Edit. |
void |
RelabeledAlignment.edit(Edit edit)
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void |
SymbolList.edit(Edit edit)
Apply an edit to the SymbolList as specified by the edit object. |
void |
AbstractSymbolList.edit(Edit edit)
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Uses of Edit in org.biojavax.bio.db.biosql |
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Methods in org.biojavax.bio.db.biosql with parameters of type Edit | |
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void |
BioSQLRichSequenceHandler.edit(RichSequence seq,
Edit edit)
Apply an edit to the Sequence as specified by the edit object. |
Uses of Edit in org.biojavax.bio.seq |
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Methods in org.biojavax.bio.seq with parameters of type Edit | |
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void |
InfinitelyAmbiguousSymbolList.edit(Edit edit)
Apply an edit to the SymbolList as specified by the edit object. |
void |
ThinRichSequence.edit(Edit edit)
Apply an edit to the SymbolList as specified by the edit object. |
void |
RichSequenceHandler.edit(RichSequence seq,
Edit edit)
Apply an edit to the Sequence as specified by the edit object. |
void |
DummyRichSequenceHandler.edit(RichSequence seq,
Edit edit)
Apply an edit to the Sequence as specified by the edit object. |
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