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Packages that use RangeLocation | |
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org.biojava.bio.gui.sequence | Graphical displays of biological sequences and associated annotations. |
org.biojava.bio.gui.sequence.tracklayout | Classes for the handling of the layout of a WrappedSequencePanel. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.io.game | Event-driven parsing system for the Gene Annotation Markup Elements (GAME). |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of RangeLocation in org.biojava.bio.gui.sequence |
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Methods in org.biojava.bio.gui.sequence that return RangeLocation | |
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RangeLocation |
SequencePoster.getRange()
Deprecated. |
RangeLocation |
PairwiseSequencePanel.getRange()
getRange returns a RangeLocation
representing the region of the sequence currently being
rendered. |
RangeLocation |
SubPairwiseRenderContext.getRange()
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RangeLocation |
HeadlessRenderContext.getRange()
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RangeLocation |
SequencePanelWrapper.getRange()
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RangeLocation |
TranslatedSequencePanel.getRange()
getRange returns a RangeLocation
representing the region of the sequence currently being
rendered. |
RangeLocation |
SequencePanel.getRange()
|
RangeLocation |
SequenceRenderContext.getRange()
The range of the SymbolList to render. |
RangeLocation |
SubSequenceRenderContext.getRange()
|
RangeLocation |
PairwiseRenderContext.getSecondaryRange()
getSecondaryRange returns the range of the
secondary sequence currently rendered. |
RangeLocation |
PairwiseSequencePanel.getSecondaryRange()
getSecondaryRange returns a
RangeLocation representing the region of the
secondary sequence currently being rendered. |
RangeLocation |
SubPairwiseRenderContext.getSecondaryRange()
|
RangeLocation |
SequencePoster.getVisibleRange()
Deprecated. |
Methods in org.biojava.bio.gui.sequence with parameters of type RangeLocation | |
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protected SequenceRenderContext |
GappedRenderer.makeContext(SequenceRenderContext src,
RangeLocation loc)
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void |
SequencePanelWrapper.setRange(RangeLocation loc)
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void |
SequencePanel.setRange(RangeLocation range)
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Constructors in org.biojava.bio.gui.sequence with parameters of type RangeLocation | |
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HeadlessRenderContext(Sequence seq,
RangeLocation range,
int width)
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SubPairwiseRenderContext(PairwiseRenderContext context,
SymbolList symbols,
SymbolList secondarySymbols,
FeatureHolder features,
FeatureHolder secondaryFeatures,
RangeLocation range,
RangeLocation secondaryRange)
Creates a new SubPairwiseRenderContext . |
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SubSequenceRenderContext(SequenceRenderContext src,
SymbolList symbols,
FeatureHolder features,
RangeLocation range)
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SubSequenceRenderContext(SequenceRenderContext src,
SymbolList symbols,
FeatureHolder features,
RangeLocation range,
int symOffset)
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Uses of RangeLocation in org.biojava.bio.gui.sequence.tracklayout |
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Methods in org.biojava.bio.gui.sequence.tracklayout that return RangeLocation | |
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RangeLocation[] |
UserDefinedTrackLayout.getRanges()
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RangeLocation[] |
TrackLayout.getRanges()
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RangeLocation[] |
SimpleTrackLayout.getRanges()
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Methods in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation | |
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void |
UserDefinedTrackLayout.setRange(RangeLocation loc)
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void |
TrackLayout.setRange(RangeLocation loc)
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void |
SimpleTrackLayout.setRange(RangeLocation loc)
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Constructors in org.biojava.bio.gui.sequence.tracklayout with parameters of type RangeLocation | |
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UserDefinedTrackLayout(RangeLocation[] ranges)
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Uses of RangeLocation in org.biojava.bio.seq |
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Methods in org.biojava.bio.seq with parameters of type RangeLocation | |
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static Sequence |
SequenceTools.maskSequence(Sequence seq,
RangeLocation loc)
Mask of a sequence. |
Uses of RangeLocation in org.biojava.bio.seq.io.game |
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Methods in org.biojava.bio.seq.io.game with parameters of type RangeLocation | |
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void |
GAMETranscriptCallbackItf.reportExon(RangeLocation range,
StrandedFeature.Strand strand)
Allows nesting class that manages a transcript template to gain information about its extent from nested elements that represent exons. |
void |
GAMEFeatureSetHandler.reportExon(RangeLocation range,
StrandedFeature.Strand strand)
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Uses of RangeLocation in org.biojava.bio.symbol |
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Subclasses of RangeLocation in org.biojava.bio.symbol | |
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class |
MergeLocation
Produced by LocationTools as a result of union operations. |
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