Uses of Interface
org.biojava.utils.ParseErrorListener

Packages that use ParseErrorListener
org.biojava.bio.program.phred Parser for Phred output 
org.biojava.bio.seq.io Classes and interfaces for processing and producing flat-file representations of sequences. 
org.biojava.utils Miscellaneous utility classes used by other BioJava components. 
 

Uses of ParseErrorListener in org.biojava.bio.program.phred
 

Classes in org.biojava.bio.program.phred that implement ParseErrorListener
 class PhredFormat
          Format object representing Phred Quality files.
 

Methods in org.biojava.bio.program.phred with parameters of type ParseErrorListener
 void PhredFormat.addParseErrorListener(ParseErrorListener theListener)
          Adds a parse error listener to the list of listeners if it isn't already included.
 void PhredFormat.removeParseErrorListener(ParseErrorListener theListener)
          Removes a parse error listener from the list of listeners if it is included.
 

Uses of ParseErrorListener in org.biojava.bio.seq.io
 

Classes in org.biojava.bio.seq.io that implement ParseErrorListener
 class EmblLikeFormat
          Deprecated. Use org.biojavax.bio.seq.io.EMBLFormat instead
 class FastaFormat
          Deprecated. Use org.biojavax.bio.seq.io.FastaFormat
 class GenbankFormat
          Deprecated. Use org.biojavax.bio.seq.io.GenbankFormat
 class GenbankXmlFormat
          Deprecated. Use org.biojavax.bio.seq.io.INSDseqFormat
 class GenpeptFormat
          Deprecated. Use org.biojavax.bio.seq.io framework instead
 class StreamReader
          Parses a stream into sequences.
 

Methods in org.biojava.bio.seq.io with parameters of type ParseErrorListener
 void EmblProcessor.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void SwissprotProcessor.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void GenbankProcessor.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void EmblLikeFormat.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void FastaFormat.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void GenbankFormat.addParseErrorListener(ParseErrorListener theListener)
          Deprecated. Adds a parse error listener to the list of listeners if it isn't already included.
 void EmblProcessor.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 void SwissprotProcessor.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 void GenbankProcessor.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 void EmblLikeFormat.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 void FastaFormat.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 void GenbankFormat.removeParseErrorListener(ParseErrorListener theListener)
          Deprecated. Removes a parse error listener from the list of listeners if it is included.
 

Uses of ParseErrorListener in org.biojava.utils
 

Methods in org.biojava.utils with parameters of type ParseErrorListener
 void ParseErrorSource.addParseErrorListener(ParseErrorListener theListener)
          Adds a parse error listener to the list of listeners.
 void ParseErrorSource.removeParseErrorListener(ParseErrorListener theListener)
          Removes a parse error listener from the list of listeners.